Neuroscience Graduate Program at UCSF
NS222 - Fall 2008
Signaling in Neurobiology
Course Director: Louis Reichardt
E-mail: louis.reichardt@ucsf.edu
Prerequisite: NS201 or permission of the course director.
First Class: Thursday, October 2, 2008
Classes are held in GH S261, Mission Bay. (unless noted otherwise)
Please see schedule for dates and times.
Attendance is expected (for those taking the course for credit).
Course Description:
This course will discuss receptor-mediated signal transduction and its regulation at the cellular level. The first part of the course will
be largely didactic, reviewing basic principles of information theory and molecular pharmacology that are relevant to all signaling
systems. The second part of the course will focus on selected receptors and regulatory mechanisms that function in neurons.
Faculty experts in each area will present a lecture and assign relevant research paper(s) for student discussion. Topics include G
protein-coupled receptors and regulation, regulation of ion channel signaling, receptor tyrosine kinases, Wnt signaling, TGF-beta
signaling, polarity and chemotaxis.
Course Materials:
Materials will be located at the right as they are added.
Class Schedule:
Date |
Time |
Location |
Lecturer |
Subject |
October |
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Thurs. |
5:30-7:30pm |
MB GH S261 |
Mark von Zastrow |
Signals and Noise |
Tues. Oct. 7 |
5:30-7:30pm |
MB GH S261 |
Dynamic Range and Adaptation |
|
Thursday, October 9, 2008 - NO CLASS - Yom Kippur |
||||
Tues. Oct. 14 |
5:30-7:30pm |
MB GH S261 |
Ultrasensitivity and Decisions |
|
Thurs. Oct. 16 |
5:30-7:30pm |
MB GH S271 |
Mark von Zastrow |
Spatiotemporal Signaling |
Mon. Oct. 20 |
6:15-8:15pm |
MB GH S261 |
Receptor Theory |
|
Wed. Oct. 22 |
5:30-7:30pm |
MB GH S261 |
Mark von Zastrow |
Molecular Pharmacology |
Mon. Oct. 27 |
6:15-8:15pm |
MB GH S261 |
Louis Reichardt |
Calcium Signaling I |
Wed. Oct. 29 |
5:30-7:30pm |
MB GH S261 |
Louis Reichardt |
Calcium Signaling II |
November |
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Mon. Nov. 3 |
6:15-8:15pm |
MB GH S261 |
Louis Reichardt |
Calcium Signaling III |
Wed. Nov. 5 |
5:30-7:30pm |
MB GH S261 |
Susan Voglmaier & Louis Reichardt |
|
Mon. Nov. 10 |
6:15-8:15pm |
MB GH S261 |
Susan Voglmaier & Louis Reichardt |
Signaling Control of Presynaptic Function II |
Wed. Nov. 12 |
5:30-7:30pm |
MB GH S261 |
Signaling Pathways that Control Postsynaptic Assembly. Actin Cytoskeleton and Cell Adhesion |
|
November 17 and 19 - NO CLASS - SFN |
||||
Mon. Nov. 24 |
6:15-8:15pm |
MB GH S261 |
Louis Reichardt |
Signaling Pathways that Control Postsynaptic Assembly. Eph Receptors and Ephrins |
Tues. Nov. 25 |
Class Canceled |
|||
November 26 - NO CLASS - Thanksgiving |
||||
December |
||||
Mon. Dec.1 |
6:15-8:15pm |
MB GH S261 |
Louis Reichardt |
Neurotrophin Signaling II. Roles at the Synapse |
Wed. Dec. 3 |
5:30-7:30pm |
MB GH S261 |
Synaptic Scaling I |
|
Mon. Dec. 8 |
6:15-8:15pm |
MB GH S261 |
Graeme Davis & Louis Reichardt |
Synaptic Scaling II |
Wed. Dec. 10 |
5:30-7:30pm |
MB GH S261 |
Louis Reichardt |
Local Translation Control 1 |
Mon. Dec. 15 |
6:15-8:15pm |
MB GH S261 |
Lily Jan & Louis Reichardt |
Local Translation Control II |
Wed. Dec. 17 |
5:30-7:30pm |
MB GH S261 |
Lily Jan & Louis Reichardt |
Local Translation Control III |
Courses
Course Materials
(UCSF Access Only)
October
10/2/08 and 10/7/08
Reading list
Presentation
Handout
10/14/08 and 10/16/08
Presentation
Handout
10/20/08
Presentation
10/22/08
Research paper
Background paper 1
Background paper 2
Background paper 3
10/27/08
Presentation
Reviews
Catterall--Neuron
Catterall--Ann. Rev. Cell Dev. Biol.
Berridge--Nat. Rev. Nol. Cell Biol.
Discussion Papers
Cao--Neuron
Kang--Cell
Additional Papers
Splawski--Cell
Dickman--J. Neurosci
Kittel--Science
Guillaud--Nature Cell Biol.
Nowycky--Nature
10/29/08
Presentation
Reviews
Flavell--Ann. Rev. Neuroscience
Greer--Neuron
Geiss-Friedlander--Nat. Rev. Mol. Cell Biol.
Discussion Papers
Screaton--Cell
Shalizi--Science
Additional Papers
Tao--Neuron
Aizawa--Science
Sheng--Science
Chawla--Science
Barco--Neuron
Graef--Cell
Hanson--Neuron
Shen--Nat. Neurosci.
November
11/3/08
Reviews
Zheng--Ann. Rev. Cell Dev. Biol.
Gomez--Nat. Rev. Neurosci
Original Papers
Nishiyama--Nature
Guan--Cell
Mochida--Neuron
Additional Papers
Robles--Neuron
Henley--Neuron
Ming--Nature
Gomez--Science
11/5/08
Reviews
Sudhof--Ann. Rev. Neurosci
Rizo--Nat. Structural & Molecular Biolology
Rizzoli--Nat. Rev. Neurosci
Kaeser--Biochem Soc. Trans.
Chapman--Annu. Rev. Biochem.
Discussion Papers
Bhalla--Nature Struct. Molec. Biol.
Kiyonaka--Nat. Neurosci.
Additional Papers
Thomson--J. Comput. Neurosci
Chi--Nat. Neurosci
Evans--J. Neurosci
Chi--Neuron
Siksou--J. Neurosci
Calakos--Neuron
Rhee--Cell
11/10/08
Review
Schmid--Nature
Royle--J. Physiol
Cheung--Neuron
Discussion Papers
Mani--Neuron
Anggono--Nat. Neurosci
Additional Paper
Tan--Nat. Cell. Biol.
11/12/08
Reviews
Tada--Cur. Opinion in Neurobiology
Huang--Nat. Rev. Neurosci.
Newey--J Neurobiology
Jaffe--Annu. Rev. Cell Dev. Biol.
Tai--Curr. Opin. Cell. Biol.
Pollard--Annu. Rev. Biophys. Biomol. Struct.
Discussion Papers
Yasuda--Neuron
Saneyoshi--Neuron
Zhang--Dev. Cell
Zhang--Nature Cell Biology
Passafaro--Nature
11/24/08
Presentation
Reviews
Pasquale--Cell
Egea--Trends Cell Biol.
Discussion Papers
Kayser--Neuron
Fu--Nat. Neurosci.
Lim--Nat. Neurosci.
Segura--Nat. Neurosci.
Chattopadhyaya--Neuron
Additional Papers
Lee--Nat. Cell Biol.
Li--Neuron
Dalva--Cell
Kayser--J. Neurosci
Penzes--Neuron
Tolias--PNAS
11/25/08
Reviews
Zweifel--Nat. Rev. Neurosci.
Reichardt--Philos. Trans. R. Soc. Lond. B. Biol. Sci.
Discussion Papers
Riccio--Mol. Cell.
Geetha--Mol. Cell.
Egan--Cell
Lee--Science
Additional Papers
Wu--Trends in Cell Biology
Graef--Cell
Deinhardt--Neuron
Makkerh--EMBO Rep.
Geetha--Traffic
Howe--Neuron
Arevalo--Neuron
Rajagopal--J. Neurosci.
Kenchappa--Neuron
Ye--Neuron
December
12/1/08
Presentation
Reviews
McNamara--Sci. STKE
Martinowich--Nat. Neurosci.
Discussion Papers
Huang--Neuron
Zakharenko--Neuron
Barco--Neuron
Pang--Science
Additional Papers
Ji--Nat. Neurosci.
Woo--Nat. Neurosci.
Shen--Neuron
12/3/08
Reviews
Marder--Neuron
Davis--Ann. Rev. Neruosci.
Turrigiano--Nat. Rev. Neurosci.
Turrigiano--Current Opinion in Neurobiology
Discussion Papers
Turrigiano--Science
Turrigiano--Nature
Ibata--Neuron
Maclean--Neuron
Seeburg--Neuron
12/8/08
Discussion Papers
Davis--Nature
Frank--Neuron
Stellwagen--Nature
Cingolani--Neuron
Additional References
Branco--Neuron
12/10/08
Review
Roberts--Trends in Neuroscience
Discussion Papers
Lyles--Neuron
Villareal--Curr. Biol.
Cai--Curr. Biol.
Optional Additional Readings
Sherff--Neurobiology of Learning and Memory
Si--Cell
Bailey--Neuron
Hu--J. Neurosci
12/15/08
Presentation for 12/15 and 12/17
Reviews
Kelleher--Neuron
Sossin--Traffice
Discussion Papers
An--Cell
Park--Neuron
Optional Additional Readings
Reviews:
Klann--Nat. Rev. Neurosci.
Routtenberg--Trends in Neurosciences
Hirokawa--J. Neurosci.
Schuman--J. Neurosci.
Sonenberg--Molecular Cell
Papers:
Frey--Nature
Costa--Dev. Cell
Zhong--BMC Neuroscience
Stein--J. Neurosci.
Sutton--Cell
Ashraf--Cell
Pan--J. Neurosci.
Chen--PLoS Computational Biology
Ishikawa--J. Neurosci.
Narayanan--Journal of Biological Chemistry
Lin--Molecular and Cellular Biology
Emms--Nature Neuroscience
12/17/08
Review
Yi--Neuron
Discussion Papers
Hoogenraad--Developmental Cell
Yao--Cell
Optional Additional Readings
Reviews:
DiAntonio--Annual REview of Neuroscience
Hegde--Progress in Neurobiology
Zarnescu--Developmental Cell
Seeburg--Oncogene
Beg--Science
Scheschonka--Trends in Neurosciences
Haas--Biochimica et Biophysica Acta
Margeta--Current Opinion in Neurobiology
Papers:
Pak--Science
Ehlers--Nature Neuroscience
Colledge--Neuron
Liao--Nature
Ding--Science
Wu--Neural Development
Lu--Journal of Cell Biology
Dindot--Human Molecular Genetics
Chao--Journal of Cell Biology
Papers to pick up in later sessions
Yuan--Nat. Cell Biol.