UCSF home page UCSF home page About UCSF UCSF Medical Center
UCSF navigation bar

Neuroscience Graduate Program at UCSF

NS222 - Fall 2008

NS222 - Fall 2008
Signaling in Neurobiology

Course Director: Louis Reichardt
E-mail: louis.reichardt@ucsf.edu

Prerequisite: NS201 or permission of the course director.

First Class: Thursday, October 2, 2008
Classes are held in GH S261, Mission Bay. (unless noted otherwise)
Please see schedule for dates and times.
Attendance is expected (for those taking the course for credit).

Course Description:
This course will discuss receptor-mediated signal transduction and its regulation at the cellular level. The first part of the course will be largely didactic, reviewing basic principles of information theory and molecular pharmacology that are relevant to all signaling systems. The second part of the course will focus on selected receptors and regulatory mechanisms that function in neurons. Faculty experts in each area will present a lecture and assign relevant research paper(s) for student discussion. Topics include G protein-coupled receptors and regulation, regulation of ion channel signaling, receptor tyrosine kinases, Wnt signaling, TGF-beta signaling, polarity and chemotaxis.

Course Materials:
Materials will be located at the right as they are added.

Class Schedule:

Date
Time
Location
Lecturer
Subject
October

Thurs.
Oct. 2

5:30-7:30pm
MB GH S261
Mark von Zastrow
Signals and Noise
Tues.
Oct. 7
5:30-7:30pm
MB GH S261

Mark von Zastrow

Dynamic Range and Adaptation
Thursday, October 9, 2008 - NO CLASS - Yom Kippur
Tues.
Oct. 14
5:30-7:30pm
MB GH S261

Mark von Zastrow

Ultrasensitivity and Decisions
Thurs.
Oct. 16
5:30-7:30pm
MB GH S271
Mark von Zastrow
Spatiotemporal Signaling
Mon.
Oct. 20
6:15-8:15pm
MB GH S261

Mark von Zastrow

Receptor Theory
Wed.
Oct. 22
5:30-7:30pm
MB GH S261
Mark von Zastrow
Molecular Pharmacology
Mon.
Oct. 27
6:15-8:15pm
MB GH S261

Louis Reichardt

Calcium Signaling I
Wed.
Oct. 29
5:30-7:30pm
MB GH S261
Louis Reichardt
Calcium Signaling II
November
Mon.
Nov. 3
6:15-8:15pm
MB GH S261
Louis Reichardt
Calcium Signaling III
Wed.
Nov. 5
5:30-7:30pm
MB GH S261
Susan Voglmaier & Louis Reichardt
Signaling Control of Presynaptic Function I

Updated Reading list for 11/5 and 11/10
Mon.
Nov. 10
6:15-8:15pm
MB GH S261
Susan Voglmaier & Louis Reichardt
Signaling Control of Presynaptic Function II
Wed.
Nov. 12
5:30-7:30pm
MB GH S261

Louis Reichardt

Signaling Pathways that Control Postsynaptic Assembly. Actin Cytoskeleton and Cell Adhesion

November 17 and 19 - NO CLASS - SFN
Mon.
Nov. 24
6:15-8:15pm
MB GH S261
Louis Reichardt
Signaling Pathways that Control Postsynaptic Assembly. Eph Receptors and Ephrins
Tues.
Nov. 25
Class Canceled
November 26 - NO CLASS - Thanksgiving
December
Mon.
Dec.1
6:15-8:15pm
MB GH S261
Louis Reichardt
Neurotrophin Signaling II. Roles at the Synapse
Wed.
Dec. 3
5:30-7:30pm
MB GH S261

Graeme Davis & Louis Reichardt

Synaptic Scaling I
Mon.
Dec. 8
6:15-8:15pm
MB GH S261
Graeme Davis & Louis Reichardt
Synaptic Scaling II
Wed.
Dec. 10
5:30-7:30pm
MB GH S261
Louis Reichardt
Local Translation Control 1
Mon.
Dec. 15
6:15-8:15pm
MB GH S261
Lily Jan & Louis Reichardt
Local Translation Control II
Wed.
Dec. 17
5:30-7:30pm
MB GH S261
Lily Jan & Louis Reichardt
Local Translation Control III

Courses


Course Materials
(UCSF Access Only)

October

10/2/08 and 10/7/08
Reading list
Presentation
Handout

10/14/08 and 10/16/08
Presentation
Handout

10/20/08
Presentation

10/22/08
Research paper
Background paper 1
Background paper 2
Background paper 3

10/27/08
Presentation
Reviews
Catterall--Neuron
Catterall--Ann. Rev. Cell Dev. Biol.
Berridge--Nat. Rev. Nol. Cell Biol.
Discussion Papers
Cao--Neuron
Kang--Cell
Additional Papers
Splawski--Cell
Dickman--J. Neurosci
Kittel--Science
Guillaud--Nature Cell Biol.
Nowycky--Nature

10/29/08
Presentation
Reviews
Flavell--Ann. Rev. Neuroscience
Greer--Neuron
Geiss-Friedlander--Nat. Rev. Mol. Cell Biol.
Discussion Papers
Screaton--Cell
Shalizi--Science
Additional Papers
Tao--Neuron

Aizawa--Science
Sheng--Science
Chawla--Science
Barco--Neuron
Graef--Cell
Hanson--Neuron
Shen--Nat. Neurosci.

November

11/3/08
Reviews
Zheng--Ann. Rev. Cell Dev. Biol.
Gomez--Nat. Rev. Neurosci
Original Papers
Nishiyama--Nature
Guan--Cell
Mochida--Neuron
Additional Papers
Robles--Neuron

Henley--Neuron
Ming--Nature
Gomez--Science

11/5/08
Reviews
Sudhof--Ann. Rev. Neurosci
Rizo--Nat. Structural & Molecular Biolology
Rizzoli--Nat. Rev. Neurosci
Kaeser--Biochem Soc. Trans.
Chapman--Annu. Rev. Biochem.
Discussion Papers
Bhalla--Nature Struct. Molec. Biol.
Kiyonaka--Nat. Neurosci.
Additional Papers
Thomson--J. Comput. Neurosci
Chi--Nat. Neurosci
Evans--J. Neurosci
Chi--Neuron
Siksou--J. Neurosci
Calakos--Neuron
Rhee--Cell

11/10/08
Review
Schmid--Nature
Royle--J. Physiol
Cheung--Neuron

Discussion Papers
Mani--Neuron
Anggono--Nat. Neurosci
Additional Paper
Tan--Nat. Cell. Biol.

11/12/08
Reviews
Tada--Cur. Opinion in Neurobiology
Huang--Nat. Rev. Neurosci.
Newey--J Neurobiology
Jaffe--Annu. Rev. Cell Dev. Biol.
Tai--Curr. Opin. Cell. Biol.
Pollard--Annu. Rev. Biophys. Biomol. Struct.
Discussion Papers
Yasuda--Neuron
Saneyoshi--Neuron
Zhang--Dev. Cell
Zhang--Nature Cell Biology
Passafaro--Nature

11/24/08
Presentation
Reviews
Pasquale--Cell
Egea--Trends Cell Biol.
Discussion Papers
Kayser--Neuron
Fu--Nat. Neurosci.
Lim--Nat. Neurosci.
Segura--Nat. Neurosci.
Chattopadhyaya--Neuron
Additional Papers
Lee--Nat. Cell Biol.
Li--Neuron
Dalva--Cell
Kayser--J. Neurosci
Penzes--Neuron
Tolias--PNAS

11/25/08
Reviews
Zweifel--Nat. Rev. Neurosci.
Reichardt--Philos. Trans. R. Soc. Lond. B. Biol. Sci.
Discussion Papers
Riccio--Mol. Cell.
Geetha--Mol. Cell.
Egan--Cell
Lee--Science
Additional Papers
Wu--Trends in Cell Biology
Graef--Cell
Deinhardt--Neuron
Makkerh--EMBO Rep.
Geetha--Traffic
Howe--Neuron
Arevalo--Neuron
Rajagopal--J. Neurosci.
Kenchappa--Neuron
Ye--Neuron

December

12/1/08
Presentation
Reviews
McNamara--Sci. STKE
Martinowich--Nat. Neurosci.
Discussion Papers
Huang--Neuron
Zakharenko--Neuron
Barco--Neuron
Pang--Science
Additional Papers
Ji--Nat. Neurosci.
Woo--Nat. Neurosci.
Shen--Neuron

12/3/08
Reviews
Marder--Neuron
Davis--Ann. Rev. Neruosci.
Turrigiano--Nat. Rev. Neurosci.
Turrigiano--Current Opinion in Neurobiology
Discussion Papers
Turrigiano--Science

Turrigiano--Nature
Ibata--Neuron
Maclean--Neuron
Seeburg--Neuron

12/8/08
Discussion Papers
Davis--Nature
Frank--Neuron
Stellwagen--Nature
Cingolani--Neuron
Additional References
Branco--Neuron

12/10/08
Review
Roberts--Trends in Neuroscience
Discussion Papers
Lyles--Neuron
Villareal--Curr. Biol.
Cai--Curr. Biol.
Optional Additional Readings
Sherff--Neurobiology of Learning and Memory
Si--Cell
Bailey--Neuron
Hu--J. Neurosci

12/15/08
Presentation for 12/15 and 12/17
Reviews
Kelleher--Neuron
Sossin--Traffice
Discussion Papers
An--Cell
Park--Neuron
Optional Additional Readings
Reviews:
Klann--Nat. Rev. Neurosci.
Routtenberg--Trends in Neurosciences
Hirokawa--J. Neurosci.
Schuman--J. Neurosci.
Sonenberg--Molecular Cell
Papers:
Frey--Nature
Costa--Dev. Cell
Zhong--BMC Neuroscience
Stein--J. Neurosci.
Sutton--Cell
Ashraf--Cell
Pan--J. Neurosci.
Chen--PLoS Computational Biology
Ishikawa--J. Neurosci.
Narayanan--Journal of Biological Chemistry
Lin--Molecular and Cellular Biology
Emms--Nature Neuroscience

12/17/08
Review
Yi--Neuron
Discussion Papers
Hoogenraad--Developmental Cell
Yao--Cell
Optional Additional Readings
Reviews:
DiAntonio--Annual REview of Neuroscience
Hegde--Progress in Neurobiology
Zarnescu--Developmental Cell
Seeburg--Oncogene
Beg--Science
Scheschonka--Trends in Neurosciences
Haas--Biochimica et Biophysica Acta
Margeta--Current Opinion in Neurobiology
Papers:
Pak--Science
Ehlers--Nature Neuroscience
Colledge--Neuron
Liao--Nature
Ding--Science
Wu--Neural Development
Lu--Journal of Cell Biology
Dindot--Human Molecular Genetics
Chao--Journal of Cell Biology

Papers to pick up in later sessions
Yuan--Nat. Cell Biol.